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Supermicro sys-5017r-mtf [35/106] Installing a cpu heatsink

Chapter 5: Advanced Motherboard Setup

5-5

Screw#1

Screw#2

Installing a CPU Heatsink

1. Do not apply any thermal grease to the heatsink or the CPU die; the required

amount has already been applied.

2. Place the heatsink on top of the CPU so that the four mounting holes are

aligned with those on the serverboard and the heatsink bracket underneath.

3. Screw in two diagonal screws (i.e., the #1 and the #2 screws) until just snug.

(To avoid possible damage to the CPU do not over-tighten the screws.)

4. Finish the installation by fully tightening all four screws.

Screw#3

Top View

Bottom View

Side View

Screw#1

Screw#2Screw#3

Screw#4

Содержание

Manual revision 1 release date februarty 15 2012 2
Printed in the united states of america 2
Warning handling of lead solder materials used in this product may expose you to lead a chemical known to the state of california to cause birth defects and other repro ductive harm 2
About this manual 3
Chapter 1 introduction 3
Chapter 2 server installation 3
Chapter 3 system interface 3
Manual organization 3
Preface 3
Appendix a post error beep codes 4
Appendix b uefi bios recovery instructions 4
Appendix c system speciﬁ cations 4
Chapter 4 system safety 4
Chapter 5 advanced serverboard setup 4
Chapter 6 advanced chassis setup 4
Chapter 7 bios 4
Chapter 1 introduction 6
Chapter 2 server installation 6
Chapter 3 system interface 6
Table of contents 6
Chapter 4 system safety 7
Chapter 5 advanced motherboard setup 7
Appendix a post error beep codes 8
Appendix b uefi bios recovery instructions 8
Appendix c system speciﬁ cations 8
Chapter 6 advanced chassis setup 8
Chapter 7 bios 8
1 overview 9
Chapter 1 9
Introduction 9
2 motherboard features 10
I o ports 10
Memory 10
Processors 10
Scu sata 10
Serial ata 10
3 server chassis features 11
Control panel 11
Cooling system 11
Intelligent power node manager nm 11
Sata subsystem 11
System power 11
Ddriii 12
Erver 5017r mtf 5017r mtrf user s manual 12
Figure 1 1 intel c600 chipset system block diagram 12
Note this is a general block diagram please see chapter 5 for details 12
Pch patsburg ssb d 12
4 contacting supermicro 13
Asia paciﬁ c 13
Europe 13
Headquarters 13
1 overview 15
2 unpacking the system 15
3 preparing for setup 15
Chapter 2 15
Choosing a setup location 15
Server installation 15
Rack precautions 16
Server precautions 16
Warnings and precautions 16
Ambient operating temperature 17
Circuit overloading 17
Mechanical loading 17
Rack mounting considerations 17
Reduced airﬂ ow 17
Reliable ground 17
4 installing the system into a rack 18
Identifying the sections of the rack rails 18
Installing the rear inner rails 18
Installing the rack rails 19
Installing the server into the rack 20
Installing the server into a telco rack 21
1 overview 23
2 control panel buttons 23
Chapter 3 23
System interface 23
3 control panel leds 24
Overheat fan fail 24
4 hard drive carrier leds 25
1 electrical safety precautions 27
Chapter 4 27
System safety 27
2 general safety precautions 28
3 esd precautions 29
4 operating precautions 30
1 handling the motherboard 31
Advanced motherboard setup 31
Chapter 5 31
Precautions 31
Unpacking 31
2 processor and heatsink installation 32
Installing an lga2011 processor 32
Installing a cpu heatsink 35
3 connecting cables 37
Connecting data cables 37
Connecting power cables 37
Connecting the control panel 37
4 i o ports 38
5 installing memory 39
Caution 39
Memory population guidelines 40
Chapter 5 advanced motherboard setup 41
Recommended population balanced 41
6 adding pci cards 42
7 motherboard details 43
Chapter 5 advanced motherboard setup 43
Figure 5 4 super x9sri f layout 43
For home or office use 43
I sata0 43
I sata1 43
I sata2 i sata3 43
I sata3 i sata2 43
I sata4 43
I sata5 43
Jbt1 cmos clear see section 5 9 43
Ji2c1 ji2c2 smb to pci e slots on enabled 43
Jpb1 bmc enable pins 1 2 enabled 43
Jpbios1 bios recovery pins 1 2 normal 43
Jpg1 onboard vga enable pins 1 2 enabled 43
Jpl1 jpl2 lan1 lan2 enable pins 1 2 enabled 43
Jpme1 intel me mode select pins 1 2 normal 43
Jpusb1 usb power select pins 2 3 dual power 43
Jstby1 wake on lan enable pins 2 3 enabled 43
Jumper description default 43
Jwd1 watch dog reset pins 1 2 reset 43
Lan1 lan2 43
P1 dimm1a 43
P1 dimm1b 43
P1 dimm2a 43
P1 dimm2b 43
P1 dimm3a 43
P1 dimm3b 43
P1 dimm4a p1 dimm4b 43
Rev 1 1 43
Slot4 pci e 3 x8 in x16 43
Slot5 pci e 2 x4 in x16 43
Slot6 pci e 3 x16 43
Tested to comply 43
With fcc standards 43
X9sri f quick reference 43
Connector description 44
Led description color state status 44
8 connector deﬁ nitions 45
Chapter 5 advanced motherboard setup 45
For pin deﬁ nitions 45
Hdd led 45
Header is located on pins 19 and 20 45
Nmi button 45
Of jf1 refer to the table on the right 45
Pin processor pwr 24 pin main pwr 45
Pins 15 and 16 of jf1 refer to the table on the right for pin deﬁ nitions 45
Power connectors 45
Power led 45
The 24 pin main power connector jpw1 is used to provide power to the motherboard the 8 pin cpu pwr connector jpw2 is also required for the processor these power connectors meet the ssi eps 12v speciﬁ cation see the tables on the right for pin deﬁ nitions 45
The hdd led connections are located on pins 13 and 14 of jf1 attach a cable here to indicate hdd activity see the table on 45
The non maskable interrupt button 45
The power led connection is located on 45
The right for pin deﬁ nitions 45
And 8 of jf1 to display uid unit id sig 46
And oh fan fail connections on pins 7 46
Case refer to the table on the right for 46
Chassis overheat fan failure refer to the 46
Connect an led cable to the front uid 46
Erver 5017r mtf 5017r mtrf user s manual 46
Nals or to provide advanced warnings for 46
Nic1 nic2 lan1 lan2 46
On pins 5 and 6 of jf1 refer to the table on the right for pin deﬁ nitions 46
Overheat oh fan fail front uid led 46
Pin deﬁ nitions 46
Power fail led 46
Reset button 46
Table on the right for pin deﬁ nitions 46
The nic network interface controller led connection for lan port 1 is located on pins 11 and 12 of jf1 and the led connection for lan port 2 is on pins 9 and 10 nic1 led and nic2 led are 2 pin nic led headers attach nic led cables to nic1 led and nic2 led to display network activities for lan 1 and lan2 refer to the table on the right for pin deﬁ nitions 46
The power fail led connection is located 46
The reset button connection is located on pins 3 and 4 of jf1 attach it to a the hardware reset button on the computer 46
A usb connector usb cables are not 47
Additional six usb ports in three head 47
Are located on the i o backpanel and an 47
Back chassis access usb 11 is a type 47
Chapter 5 advanced motherboard setup 47
Ers usb2 3 4 5 12 13 provide front 47
Included see the tables on the right for 47
On the the motherboard see the table on the right for pin deﬁ nitions 47
Pin deﬁ nitions 47
Power button 47
Serial ports 47
The com1 port is located on the i o backpanel com2 is a header located 47
The power button connection is located on pins 1 and 2 of jf1 momentarily contacting both pins will power on off the system this button can also be conﬁ g ured to function as a suspend button see bios setup to turn off the power in the suspend mode press the button for at least 4 seconds refer to the table on the right for pin deﬁ nitions 47
Two universal serial bus ports usb 0 1 47
Universal serial bus usb 47
A chassis intrusion header is located at 48
Atx ps 2 keyboard and ps 2 mouse ports 48
Cable to pins 1 4 see the table on the right for pin deﬁ nitions 48
Chassis intrusion 48
Deﬁ nitions 48
Erver 5017r mtf 5017r mtrf user s manual 48
Fan headers 48
Jl1 on the motherboard attach the ap 48
Mouse ports are located beside the usb ports see the table on the right for pin 48
Note please use all 3 pin fans or all 4 pin fans on a motherboard do not mix 3 pin fans and 4 pin fans on the same board 48
On the jd1 header pins 6 7 are used for the internal speaker close pins 6 7 with a jumper or cap to use the onboard 48
Propriate cable from the chassis to inform 48
Sis is opened 48
Speaker if you wish to use an external speaker attach the external speaker s 48
Speaker jd1 48
The atx ps 2 keyboard and the ps 2 48
The x9sri f has ﬁ ve fan headers fan1 fan4 and fana these are all 4 pin fan headers however pins 1 3 are backward compatible with traditional 3 pin fans a fan speed control setting in the bios hardware monitoring section allows the bios to automatically set fan speeds based on the system temperature refer to the table on the right for pin deﬁ nitions 48
You of a chassis intrusion when the chas 48
A system management bus header for 49
C connector 49
C connector is 49
C on the motherboard 49
Chapter 5 advanced motherboard setup 49
Located at jp 49
Nect the appropriate cable here to use 49
Power supply 49
Power supply fan and system tempera ture see the table on the right for pin deﬁ nitions 49
System management bus jipmb 49
The ipmb i2c connection on your system 49
The ipmi slot is located at ipmb con 49
The power supply 49
The wake on lan header is located at jstby1 on the motherboard see the table on the right for pin deﬁ nitions 49
This connector monitors the status of the 49
This header is used to connect a trusted platform module tpm available sepa rately from a third party vendor a tpm is a security device that allows encryption and authentication of hard drives disal lowing access if the tpm associated with it is not installed in the system see the table on the right for pin deﬁ nitions 49
Trusted platform module header 49
Use this feature 49
Wake on lan 49
You must also have a lan card with a wake on lan connector and cable to 49
Dom pwr connector 50
Erver 5017r mtf 5017r mtrf user s manual 50
Gen1 gen power to a solid state dom 50
Nector located at jsd1 provides 5v 50
Off uid led and the front uid led this provides easy identiﬁ cation of a system 50
Pin deﬁ nitions 50
Sata ports see the table on the right for 50
Storage device connected to one of the 50
T sgpio 1 2 3 sgpio 1 2 headers 50
The disk on module dom power con 50
The rear uid switch the blue backpanel uid led and front uid led will turn on push the rear uid switch again to turn 50
The rear uid switch the rear uid led and front uid led on jf1 are designed 50
To work together when the user pushes 50
Two t sgpio serial link general pur pose input output headers are located next to the i sata ports on the mother board additionally two 3 sgpio ports are also located next to jusb 8 9 these headers are used to communicate with the enclosure management chip in the system see the table on the right for pin deﬁ nitions 50
Unit id switch uid sw 50
Unit that may be in need of service 50
Beep codes see the table on the right 51
Chapter 5 advanced motherboard setup 51
For pin deﬁ nitions 51
Internal buzzer sp1 51
Overheat fan fail led joh 51
The internal buzzer sp1 can be used 51
The joh1 header is used to connect an led to provide warnings of chassis over heat this led will also blink to indicate a fan failure refer to the table on right for pin deﬁ nitions 51
To provide audible indications for various 51
9 jumper settings 52
10 onboard indicators 54
11 sata ports 55
Chapter 5 advanced motherboard setup 55
Sata ports 55
Ten serial ata sata ports i sata 0 5 and s sata 1 4 are included on the motherboard see the table on the right for pin deﬁ nitions for the onboard sata ports 55
12 installing drivers 56
Superdoctor iii 57
1 static sensitive devices 59
Advanced chassis setup 59
Chapter 6 59
Precautions 59
Unpacking 59
2 control panel 60
Erver 5017r mtf 5017r mtrf user s manual 60
Figure 6 1 chassis front view 60
Figure 6 2 chassis rear view 60
Status indicators these wires have been bundled together in a ribbon cable to simplify the connection 60
The 5017r mtrf includes two power supplies for redundancy 60
The control panel buttons details on jf1 can be found in chapter 5 60
The control panel located on the front of the chassis must be connected to the jf1 connector on the serverboard to provide you with system control buttons and 60
The leds inform you of system status see chapter 3 for details on the leds and 60
3 accessing the inside of the system 61
4 system fans 62
5 drive bay installation removal 62
Removing the front bezel 62
System fan failure 62
Accessing the drive bays 63
Hard drive installation 63
Sata backplane 64
Dvd rom drive installation 65
6 power supply 66
Power supply failure 66
R mtf power 66
R mtrf power 67
1 introduction 69
Chapter 7 69
How to change the conﬁ guration data 69
Starting bios setup utility 69
2 main setup 70
How to start the setup utility 70
3 advanced setup conﬁ gurations 72
Boot feature 72
Processor clock options 73
Chipset conﬁ guration 76
Ide sata conﬁ guration 79
Pcie pci pnp conﬁ guration 81
Super io device conﬁ guration 82
Remote access conﬁ guration 83
Hardware health conﬁ guration 84
Acpi conﬁ guration 85
Me subsystem 86
Network stack 86
4 event logs 87
5 ipmi 88
6 iscsi 90
7 boot settings 91
8 security settings 92
9 exit options 93
10 main conﬁ guration page 94
Port conﬁ guration menu 94
Appendix a 97
Post error beep codes 97
Appendix b 99
B 1 an overview to the uefi bios 99
B 2 how to recover the uefi bios image the main bios block 99
B 3 to recover the main bios block using a usb attached device 99
Uefi bios recovery instructions 99
After locating the new bios binary image the system will enter the bios 100
Decide to proceed with bios recovery follow the procedures below 100
Erver 5017r mtf 5017r mtrf user s manual 100
Insert the usb device that contains the new bios image super rom into your usb drive and power on the system 100
Key you will see the progress of bios recovery as shown in the screen below 100
May take from a few seconds to one minute 100
Note at this point you may decide if you want to start with bios recovery if you 100
Note do not interrupt the process of bios ﬂ ashing until it is completed 100
Note if you cannot locate the super rom ﬁ le in your driver disk visit our website at www supermicro com to download the bios image into a usb ﬂ ash device and rename it to super rom for bios recovery use 100
Recovery page as shown below 100
Simultane ously on your ps2 or usb keyboard until your hear two short beeps this 100
To perform uefi bios recovery using a usb attached device follow the instruc tions below 100
Using a different machine copy the super rom binary image ﬁ le into the disc root directory of a usb device or a writeable cd dvd 100
Warning bios recovery mode has been detected 100
When the screen as shown above displays using the arrow key select the 100
After the process of bios recovery is complete press any key to reboot the 101
Appendix b uefi bios recovery 101
Note do not interrupt this process until bios ﬂ ashing is completed 101
System 101
Using a different system extract the bios package into a bootable usb ﬂ ash drive 101
Warning system firmware is being updated 101
When a dos prompt appears type ami bat biosname at the prompt 101
Appendix c 103
Chipset 103
Expansion slots 103
Memory capacity 103
Processors 103
Sata drive bays 103
Serverboard 103
System speciﬁ cations 103
Chassis 104
Operating environment 104
Power supply 104
System cooling 104
System input requirements 104
Weight 104
Regulatory compliance 105

Supermicro sys-5017r-mtf [35/106] Installing a cpu heatsink

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